/**
 *  Copyright 2005-2018 Red Hat, Inc.
 *
 *  Red Hat licenses this file to you under the Apache License, version
 *  2.0 (the "License"); you may not use this file except in compliance
 *  with the License.  You may obtain a copy of the License at
 *
 *     http://www.apache.org/licenses/LICENSE-2.0
 *
 *  Unless required by applicable law or agreed to in writing, software
 *  distributed under the License is distributed on an "AS IS" BASIS,
 *  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or
 *  implied.  See the License for the specific language governing
 *  permissions and limitations under the License.
 */
package org.jboss.fuse.patch.impl;

import java.io.File;
import java.io.FileInputStream;
import java.io.IOException;
import java.io.InputStream;
import java.net.MalformedURLException;
import java.net.URI;
import java.net.URISyntaxException;
import java.net.URL;
import java.nio.charset.StandardCharsets;
import java.util.ArrayList;
import java.util.Arrays;
import java.util.Collection;
import java.util.Collections;
import java.util.EnumSet;
import java.util.HashMap;
import java.util.HashSet;
import java.util.Iterator;
import java.util.LinkedHashMap;
import java.util.LinkedHashSet;
import java.util.LinkedList;
import java.util.List;
import java.util.Map;
import java.util.Set;
import java.util.concurrent.CountDownLatch;
import java.util.concurrent.ExecutorService;
import java.util.concurrent.Executors;
import java.util.regex.Pattern;
import java.util.stream.Collectors;

import org.apache.commons.io.FileUtils;
import org.apache.felix.utils.manifest.Attribute;
import org.apache.felix.utils.manifest.Clause;
import org.apache.felix.utils.manifest.Directive;
import org.apache.felix.utils.manifest.Parser;
import org.apache.felix.utils.version.VersionRange;
import org.apache.felix.utils.version.VersionTable;
import org.apache.karaf.features.BootFinished;
import org.apache.karaf.features.BundleInfo;
import org.apache.karaf.features.Conditional;
import org.apache.karaf.features.Feature;
import org.apache.karaf.features.FeaturesService;
import org.apache.karaf.features.Repository;
import org.apache.karaf.util.ThreadUtils;
import org.apache.karaf.util.bundles.BundleUtils;
import org.jboss.fuse.patch.PatchService;
import org.jboss.fuse.patch.management.Artifact;
import org.jboss.fuse.patch.management.BackupService;
import org.jboss.fuse.patch.management.BundleUpdate;
import org.jboss.fuse.patch.management.FeatureUpdate;
import org.jboss.fuse.patch.management.Patch;
import org.jboss.fuse.patch.management.PatchData;
import org.jboss.fuse.patch.management.PatchDetailsRequest;
import org.jboss.fuse.patch.management.PatchException;
import org.jboss.fuse.patch.management.PatchKind;
import org.jboss.fuse.patch.management.PatchManagement;
import org.jboss.fuse.patch.management.PatchReport;
import org.jboss.fuse.patch.management.PatchResult;
import org.jboss.fuse.patch.management.Pending;
import org.jboss.fuse.patch.management.Utils;
import org.osgi.framework.Bundle;
import org.osgi.framework.BundleContext;
import org.osgi.framework.BundleException;
import org.osgi.framework.Constants;
import org.osgi.framework.FrameworkEvent;
import org.osgi.framework.FrameworkListener;
import org.osgi.framework.FrameworkUtil;
import org.osgi.framework.ServiceReference;
import org.osgi.framework.Version;
import org.osgi.framework.startlevel.BundleStartLevel;
import org.osgi.framework.wiring.BundleWiring;
import org.osgi.framework.wiring.FrameworkWiring;
import org.osgi.service.component.ComponentContext;
import org.osgi.service.component.annotations.Activate;
import org.osgi.service.component.annotations.Component;
import org.osgi.service.component.annotations.Deactivate;
import org.osgi.service.component.annotations.Reference;
import org.osgi.service.component.annotations.ReferenceCardinality;
import org.osgi.service.component.annotations.ReferencePolicy;
import org.osgi.service.url.URLStreamHandlerService;
import org.osgi.util.tracker.ServiceTracker;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;

import static org.jboss.fuse.patch.management.Utils.stripSymbolicName;

@Component(immediate = true, service = PatchService.class)
public class PatchServiceImpl implements PatchService {

    public static final Logger LOG = LoggerFactory.getLogger(PatchServiceImpl.class);

    private static final String ID = "id";
    private static final String DESCRIPTION = "description";
    private static final String DATE = "date";
    private static final String BUNDLES = "bundle";
    private static final String UPDATES = "update";
    private static final String COUNT = "count";
    private static final String RANGE = "range";
    private static final String SYMBOLIC_NAME = "symbolic-name";
    private static final String NEW_VERSION = "new-version";
    private static final String NEW_LOCATION = "new-location";
    private static final String OLD_VERSION = "old-version";
    private static final String OLD_LOCATION = "old-location";
    private static final String STARTUP = "startup";
    private static final String OVERRIDES = "overrides";

    private BundleContext bundleContext;
    private File patchDir;

    private PatchManagement patchManagement;

    private FeaturesService featuresService;

    private BackupService backupService;
    private URLStreamHandlerService mvnService;

    private File karafHome;
    // by default it's ${karaf.home}/system
    private File repository;

    private OSGiPatchHelper helper;

    private BootDoneTracker bootTracker;
    private ExecutorService pool;

    // ZIP file name -> information about the patch it contains - empty after runtime or bundle restart
    private final Map<String, DeployedPatch> deployedPatches = new HashMap<>();

    @Activate
    void activate(ComponentContext componentContext) throws IOException {
        // Use system bundle' bundle context to avoid running into
        // "Invalid BundleContext" exceptions when updating bundles
        bundleContext = componentContext.getBundleContext().getBundle(0).getBundleContext();
        pool = Executors.newFixedThreadPool(1, ThreadUtils.namedThreadFactory("patch-service"));

        String dir = this.bundleContext.getProperty(PATCH_LOCATION);
        if (dir != null) {
            patchDir = new File(dir);
        } else {
            patchDir = new File(bundleContext.getProperty("karaf.home"), "patches");
            LOG.info("Can't find {} property, defaulting to {}", PATCH_LOCATION, patchDir.getCanonicalPath());
        }
        if (!patchDir.isDirectory()) {
            Utils.mkdirs(patchDir);
            if (!patchDir.isDirectory()) {
                throw new PatchException("Unable to create patch folder");
            }
        }

        this.karafHome = new File(bundleContext.getProperty("karaf.home"));
        this.repository = new File(bundleContext.getProperty("karaf.default.repository"));
        helper = new OSGiPatchHelper(karafHome, bundleContext);

        // ENTESB-15610: delete patches which were patch:added using 7.8.0.GA, because the may
        // miss important metadata
        Map<String, Patch> patches = load(false);
        patches.forEach((id, patch) -> {
            if (id != null && patch != null && id.startsWith("fuse-karaf-maintenance-patch-")) {
                String patchVersion = id.substring("fuse-karaf-maintenance-patch-".length());
                if (!patch.isInstalled()) {
                    String serviceVersion = patch.getPatchData().getServiceVersion();
                    String msg = null;
                    File autoDeployedFile = new File(this.getPatchStorage(patch).getParentFile(),
                            String.format("fuse-karaf-patch-repository-%s.zip", patchVersion));
                    // no need to inform user about removal if the patch was dropped into patches/ dir, because
                    // the patch will again be added automatically
                    boolean showMsg = !autoDeployedFile.isFile();
                    boolean remove = false;
                    if (serviceVersion == null) {
                        msg = String.format("Detected %s patch added by earlier version of patch mechanism.\n" +
                                        "This patch will be removed. Please add it again using patch:add command or run patch:find command.\n" +
                                        "You can use \"patch:add mvn:org.jboss.redhat-fuse/fuse-karaf-patch-repository/%s/zip\" command.",
                                patch.getPatchData().getId(), patchVersion);
                        remove = true;
                    } else {
                        Version currentServiceVersion = FrameworkUtil.getBundle(this.getClass()).getVersion();
                        Version previousServiceVersion = Utils.getOsgiVersion(serviceVersion);
                        if (previousServiceVersion.compareTo(currentServiceVersion) < 0) {
                            msg = String.format("Detected %s patch added by version %s of patch mechanism.\n" +
                                            "This patch will be removed. Please add it again using patch:add command or run patch:find command.\n" +
                                            "You can use \"patch:add mvn:org.jboss.redhat-fuse/fuse-karaf-patch-repository/%s/zip\" command.",
                                    patch.getPatchData().getId(), serviceVersion, patchVersion);
                            remove = true;
                        }
                    }
                    if (remove) {
                        if (showMsg) {
                            System.out.println();
                            System.out.println(msg);
                            System.out.flush();
                        } else {
                            LOG.info("Patch {} will be added again automatically", patch.getPatchData().getId());
                        }
                        patchManagement.delete(patch);
                        undeploy(patch);
                        if (showMsg) {
                            LOG.info(msg);
                        }
                    }
                }
            }
        });

        // potentially track patches dropped into FUSE_HOME/patches
        autoDeployPatches();

        load(true);

        bootTracker = new BootDoneTracker(bundleContext);
        bootTracker.open();
    }

    @Deactivate
    synchronized void deactivate() {
        bootTracker.close();
        pool.shutdownNow();
        pool = null;
    }

    private class BootDoneTracker extends ServiceTracker<BootFinished, BootFinished> {

        public BootDoneTracker(BundleContext context) {
            super(context, BootFinished.class, null);
        }

        @Override
        public BootFinished addingService(ServiceReference<BootFinished> reference) {
            synchronized (PatchServiceImpl.this) {
                if (pool != null) {
                    // we may have pool shutdown, but we'll at least schedule the task
                    LOG.info("Scheduling \"resume pending patch tasks\"");
                    pool.submit(PatchServiceImpl.this::resumePendingPatchTasks);
                }
            }
            return super.addingService(reference);
        }
    }

    /**
     * Upon startup (activation), we check if there are any *.patch.pending files. if yes, we're finishing the
     * installation
     */
    private void resumePendingPatchTasks() {
        LOG.info("Performing \"resume pending patch tasks\"");
        try {
            File[] pendingPatches = patchDir.listFiles(pathname ->
                    pathname.exists() && pathname.getName().endsWith(".pending"));
            if (pendingPatches == null || pendingPatches.length == 0) {
                return;
            }
            for (File pending : pendingPatches) {
                Pending what = Pending.valueOf(FileUtils.readFileToString(pending, "UTF-8"));

                String name = pending.getName().replaceFirst("\\.pending$", "");
                if (patchManagement.isStandaloneChild()) {
                    if (name.endsWith("." + System.getProperty("karaf.name") + ".patch")) {
                        name = name.replaceFirst("\\." + System.getProperty("karaf.name"), "");
                    } else {
                        continue;
                    }
                }
                File patchFile = new File(pending.getParentFile(), name);
                if (!patchFile.isFile()) {
                    System.out.println("Ignoring patch result file: " + patchFile.getName());
                    continue;
                }
                PatchData patchData = PatchData.load(new FileInputStream(patchFile));
                Patch patch = patchManagement.loadPatch(new PatchDetailsRequest(patchData.getId()));

                System.out.printf("Resume %s of %spatch \"%s\"%n",
                        what == Pending.ROLLUP_INSTALLATION ? "installation" : "rollback",
                        patch.getPatchData().isRollupPatch() ? "rollup " : "",
                        patch.getPatchData().getId());

                PatchResult result = patch.getResult();
                if (patchManagement.isStandaloneChild()) {
                    result = result.getChildPatches().get(System.getProperty("karaf.name"));
                    if (result == null) {
                        System.out.println("Ignoring patch result file: " + patchFile.getName());
                        continue;
                    }
                }

                // feature time

                Set<String> newRepositories = new LinkedHashSet<>();
                Map<String, Boolean> features = new LinkedHashMap<>();
                for (FeatureUpdate featureUpdate : result.getFeatureUpdates()) {
                    if (featureUpdate.getName() == null && featureUpdate.getPreviousRepository() != null) {
                        // feature was not shipped by patch
                        newRepositories.add(featureUpdate.getPreviousRepository());
                    } else if (featureUpdate.getNewRepository() == null) {
                        // feature was not changed by patch
                        newRepositories.add(featureUpdate.getPreviousRepository());
                        features.put(String.format("%s|%s", featureUpdate.getName(), featureUpdate.getPreviousVersion()), true);
                    } else {
                        // feature was shipped by patch
                        if (what == Pending.ROLLUP_INSTALLATION) {
                            newRepositories.add(featureUpdate.getNewRepository());
                            if (featureUpdate.getNewVersion() != null) {
                                features.put(String.format("%s|%s", featureUpdate.getName(), featureUpdate.getNewVersion()), true);
                            } else {
                                // ENTESB-9155, ENTESB-9213: case of a feature that was removed in new feature repository
                                features.put(String.format("%s|%s", featureUpdate.getName(), "-"), false);
                            }
                        } else {
                            newRepositories.add(featureUpdate.getPreviousRepository());
                            features.put(String.format("%s|%s", featureUpdate.getName(), featureUpdate.getPreviousVersion()), true);
                        }
                    }
                }
                System.out.println("Restoring feature repositories");
                for (String repo : newRepositories) {
                    try {
                        URI repositoryUri = URI.create(repo);
                        if (featuresService.getRepository(repositoryUri) == null) {
                            System.out.println("Restoring feature repository: " + repo);
                            featuresService.addRepository(repositoryUri);
                        }
                    } catch (Exception e) {
                        System.err.println(e.getMessage());
                        e.printStackTrace(System.err);
                        System.err.flush();
                    }
                }
                Set<String> installedFeatures = null;
                try {
                    installedFeatures = Arrays.stream(featuresService.listInstalledFeatures())
                            .map(f -> String.format("%s|%s", f.getName(), f.getVersion()))
                            .collect(Collectors.toSet());
                } catch (Exception e) {
                    System.err.println(e.getMessage());
                    e.printStackTrace(System.err);
                    System.err.flush();
                }
                EnumSet<FeaturesService.Option> options = EnumSet.noneOf(FeaturesService.Option.class);
                Set<String> toInstall = new LinkedHashSet<>();
                System.out.println("Restoring features");
                for (String f : features.keySet()) {
                    String[] fv = f.split("\\|");
                    String fid = String.format("%s/%s", fv[0], fv[1]);
                    if (!features.get(f)) {
                        System.out.printf("Removing feature %s%n", fv[0]);
                    } else if (installedFeatures == null || !installedFeatures.contains(f)) {
                        System.out.printf("Restoring feature %s%n", fid);
                        toInstall.add(fid);
                    }
                }
                try {
                    if (!toInstall.isEmpty()) {
                        featuresService.installFeatures(toInstall, options);
                    }

                    System.out.println("Refreshing features service");
                    featuresService.refreshFeatures(options);
                } catch (Exception e) {
                    System.err.println(e.getMessage());
                    e.printStackTrace(System.err);
                    System.err.flush();
                }

                // bundle time

                for (BundleUpdate update : result.getBundleUpdates()) {
                    if (!update.isIndependent()) {
                        continue;
                    }
                    String location = null;
                    if (update.getNewVersion() == null) {
                        System.out.printf("Restoring bundle %s from %s%n", update.getSymbolicName(), update.getPreviousLocation());
                        location = update.getPreviousLocation();
                    } else {
                        if (what == Pending.ROLLUP_INSTALLATION) {
                            System.out.printf("Updating bundle %s from %s%n", update.getSymbolicName(), update.getNewLocation());
                            location = update.getNewLocation();
                        } else {
                            System.out.printf("Downgrading bundle %s from %s%n", update.getSymbolicName(), update.getPreviousLocation());
                            location = update.getPreviousLocation();
                        }
                    }

                    try {
                        Bundle b = bundleContext.installBundle(location);
                        if (update.getStartLevel() > -1) {
                            b.adapt(BundleStartLevel.class).setStartLevel(update.getStartLevel());
                        }
                        switch (update.getState()) {
                            case Bundle.UNINSTALLED: // ?
                            case Bundle.INSTALLED:
                            case Bundle.STARTING:
                            case Bundle.STOPPING:
                                break;
                            case Bundle.RESOLVED:
                                // ?bundleContext.getBundle(0L).adapt(org.osgi.framework.wiring.FrameworkWiring.class).resolveBundles(...);
                                break;
                            case Bundle.ACTIVE:
                                b.start();
                                break;
                        }
                    } catch (BundleException e) {
                        System.err.println(" - " + e.getMessage());
                        //                    e.printStackTrace(System.err);
                        System.err.flush();
                    }
                }

                pending.delete();
                System.out.printf("%spatch \"%s\" %s successfully%n",
                        patch.getPatchData().isRollupPatch() ? "Rollup " : "",
                        patchData.getId(),
                        what == Pending.ROLLUP_INSTALLATION ? "installed" : "rolled back");
                if (what == Pending.ROLLUP_INSTALLATION) {
                    System.out.printf("Summary of patch %s:%n", patch.getPatchData().getId());
                    PatchReport report = patch.getResult().getReport();
                    System.out.printf(" - Bundles updated: %d%n", report.getUpdatedBundles());
                    System.out.printf(" - Features updated: %d%n", report.getUpdatedFeatures());
                    System.out.printf(" - Features removed: %d%n", report.getRemovedFeatures());
                    System.out.printf(" - Features overriden: %d%n", report.getOverridenFeatures());
                    System.out.printf("Detailed report: %s%n", new File(patch.getPatchData().getPatchLocation(), patch.getPatchData().getId() + ".patch.result.html").getCanonicalPath());
                    System.out.flush();
                }
                if (what == Pending.ROLLUP_ROLLBACK) {
                    List<String> bases = patch.getResult().getKarafBases();
                    bases.removeIf(s -> s.startsWith(System.getProperty("karaf.name")));
                    result.setPending(null);
                    patch.getResult().store();
                    if (patch.getResult().getKarafBases().size() == 0) {
                        File file = new File(patchDir, patchData.getId() + ".patch.result");
                        file.delete();
                    }
                    if (patchManagement.isStandaloneChild()) {
                        File file = new File(patchDir, patchData.getId() + "." + System.getProperty("karaf.name") + ".patch.result");
                        if (file.isFile()) {
                            file.delete();
                        }
                    }
                }
            }
        } catch (IOException e) {
            LOG.error("Error resuming a patch: " + e.getMessage(), e);
        }
    }

    @Override
    public Iterable<Patch> getPatches() {
        return Collections.unmodifiableCollection(load(true).values());
    }

    @Override
    public Patch getPatch(String id) {
        return patchManagement.loadPatch(new PatchDetailsRequest(id));
    }

    @Override
    public Iterable<Patch> download(URL url) {
        if ("file".equals(url.getProtocol())) {
            // ENTESB-4992: prevent adding non existing files or directories
            try {
                if (!new File(url.toURI()).isFile()) {
                    throw new PatchException("Path " + url.getPath() + " doesn't exist or is not a file");
                }
            } catch (URISyntaxException e) {
                throw new PatchException(e.getMessage(), e);
            }
        }
        try {
            List<PatchData> patchesData = patchManagement.fetchPatches(url);
            List<Patch> patches = new ArrayList<>(patchesData.size());
            for (PatchData patchData : patchesData) {
                Patch patch = patchManagement.trackPatch(patchData);
                patches.add(patch);
            }
            return patches;
        } catch (PatchException e) {
            throw e;
        } catch (Exception e) {
            throw new PatchException("Unable to download patch from url " + url, e);
        }
    }

    /**
     * Loads available patches without caching
     * @param details whether to load {@link org.jboss.fuse.patch.management.ManagedPatch} details too
     * @return
     */
    private Map<String, Patch> load(boolean details) {
        List<Patch> patchesList = patchManagement.listPatches(details);
        Map<String, Patch> patches = new HashMap<String, Patch>();
        for (Patch patch : patchesList) {
            patches.put(patch.getPatchData().getId(), patch);
        }
        return patches;
    }

    /**
     * Used by the patch client when executing the script in the console
     * @param ids
     */
    public void cliInstall(String[] ids) {
        final List<Patch> patches = new ArrayList<Patch>();
        for (String id : ids) {
            Patch patch = getPatch(id);
            if (patch == null) {
                throw new IllegalArgumentException("Unknown patch: " + id);
            }
            patches.add(patch);
        }
        install(patches, false, false);
    }

    @Override
    public PatchResult install(Patch patch, boolean simulate) {
        return install(patch, simulate, true);
    }

    @Override
    public PatchResult install(Patch patch, boolean simulate, boolean synchronous) {
        Map<String, PatchResult> results = install(Collections.singleton(patch), simulate, synchronous);
        return results.get(patch.getPatchData().getId());
    }

    /**
     * <p>Main installation method. Installing a patch in standalone mode is a matter of correct merge (cherry-pick, merge,
     * rebase) of patch branch into <code>master</code> branch.</p>
     * <p>Static changes are handled by git, runtime changes (bundles, features) are handled depending on patch type:<ul>
     *     <li>Rollup: clear OSGi bundle cache, reinstall features that were installed after restart</li>
     *     <li>Non-Rollup: update bundles, generate overrides.properties and update scripts to reference new versions</li>
     * </ul></p>
     * <p>For Rollup patches we don't update bundles - we clear the bundle cache instead.</p>
     * @param patches
     * @param simulate
     * @param synchronous
     * @return
     */
    private Map<String, PatchResult> install(final Collection<Patch> patches, final boolean simulate, boolean synchronous) {
        PatchKind kind = checkConsistency(patches);
        checkPrerequisites(patches);
        checkStandaloneChild(patches);
        String transaction = null;

        try {
            // Compute individual patch results (patchId -> Result)
            final Map<String, PatchResult> results = new LinkedHashMap<String, PatchResult>();

            // current state of the framework
            Bundle[] allBundles = bundleContext.getBundles();

            // bundle -> url to update the bundle from (used for non-rollup patch)
            final Map<Bundle, String> bundleUpdateLocations = new HashMap<>();
            final Set<Bundle> toReinstall = new HashSet<Bundle>();

            /* A "key" is name + "update'able version". Such version is current version with micro version == 0 */

            // [symbolic name|updateable-version] -> newest update for the bundle out of all installed patches
            final Map<String, BundleUpdate> updatesForBundleKeys = new LinkedHashMap<>();
            // [feature name|updateable-version] -> newest update for the feature out of all installed patches
            final Map<String, FeatureUpdate> updatesForFeatureKeys = new LinkedHashMap<>();

            final List<String> overridesForFeatureKeys = new LinkedList<>();

            // symbolic name -> version -> location
            final BundleVersionHistory history = createBundleVersionHistory();

            // beginning installation transaction = creating of temporary branch in git
            transaction = this.patchManagement.beginInstallation(kind);

            // bundles from etc/startup.properties + felix.framework = all bundles not managed by features
            // these bundles will be treated in special way
            // symbolic name -> Bundle
            final Map<String, Bundle> coreBundles = helper.getCoreBundles(allBundles);

            // collect runtime information from patches (features, bundles) and static information (files)
            // runtime info is prepared to apply runtime changes and static info is prepared to update KARAF_HOME files
            for (Patch patch : patches) {
                List<FeatureUpdate> featureUpdatesInThisPatch = null;
                List<String> featureOverridesInThisPatch = null;
                if (kind == PatchKind.ROLLUP) {
                    // list of feature updates for the current patch
                    featureUpdatesInThisPatch = featureUpdatesInPatch(patch, updatesForFeatureKeys, kind);

                    helper.sortFeatureUpdates(featureUpdatesInThisPatch);
                } else {
                    // list of feature overrides (new Karaf 4.2 feature override mechanism)
                    // this is collected for the purpose of summary, not to collect information needed
                    // for actual override
                    featureOverridesInThisPatch = featureOverridesInPatch(patch, kind);
                    overridesForFeatureKeys.addAll(featureOverridesInThisPatch);
                }

                // list of bundle updates for the current patch - for ROLLUP patch, we minimize the list of bundles
                // to "restore" (install after clearing data/cache) by not including bundles that are
                // already updated as part of fueatures update
                List<BundleUpdate> bundleUpdatesInThisPatch = bundleUpdatesInPatch(patch, allBundles,
                        bundleUpdateLocations, toReinstall, history, updatesForBundleKeys, kind, coreBundles,
                        featureUpdatesInThisPatch);

                // prepare patch result before doing runtime changes
                PatchResult result = null;
                if (patch.getResult() != null) {
                    result = patch.getResult();
                    if (patchManagement.isStandaloneChild()) {
                        // ENTESB-5120: "result" is actually a result of patch installation in root container
                        // we need dedicated result for admin:create based child container
                        PatchResult childResult = new PatchResult(patch.getPatchData(), simulate, System.currentTimeMillis(),
                                bundleUpdatesInThisPatch, featureUpdatesInThisPatch, featureOverridesInThisPatch, result);
                        result.addChildResult(System.getProperty("karaf.name"), childResult);
                    }
                } else {
                    result = new PatchResult(patch.getPatchData(), simulate, System.currentTimeMillis(),
                            bundleUpdatesInThisPatch, featureUpdatesInThisPatch, featureOverridesInThisPatch);
                }
                result.getKarafBases().add(String.format("%s | %s",
                        System.getProperty("karaf.name"), System.getProperty("karaf.base")));
                results.put(patch.getPatchData().getId(), result);
                patch.setResult(result);

                // each patch may change files, we're not updating the main files yet - it'll be done when
                // install transaction is committed
                patchManagement.install(transaction, patch, bundleUpdatesInThisPatch);
            }

            // We don't have to update bundles that are uninstalled anyway when uninstalling features we
            // are updating (updating a feature = uninstall + install)
            // When feature is uninstalled, its bundles may get uninstalled too, if they are not referenced
            // from any other feature, including special (we're implementation aware!) "startup" feature
            // that is created during initailization of FeaturesService. As expected, this feature contains
            // all bundles started by other means which is:
            // - felix.framework (system bundle)
            // - all bundles referenced in etc/startup.properties

            // One special case
            if (kind == PatchKind.NON_ROLLUP) {
                // for rollup patch, this bundle will be installed from scratch
                for (Map.Entry<Bundle, String> entry : bundleUpdateLocations.entrySet()) {
                    Bundle bundle = entry.getKey();
                    if (bundle.getSymbolicName() != null
                            && "org.ops4j.pax.url.mvn".equals(stripSymbolicName(bundle.getSymbolicName()))) {
                        // handle this bundle specially - update it here
                        URL location = new URL(entry.getValue());
                        System.out.printf("Special update of bundle \"%s\" from \"%s\"%n",
                                bundle.getSymbolicName(), location);
                        if (!simulate) {
                            update(bundle, location);
                            bundle.start();
                        }
                        // replace location - to be stored in result
                        bundleUpdateLocations.put(bundle, location.toString());
                    }
                }
            }

            if (kind == PatchKind.ROLLUP) {
                Presentation.displayFeatureUpdates(updatesForFeatureKeys.values(), true);
            } else {
                Presentation.displayFeatureOverrides(overridesForFeatureKeys, true);
            }

            // effectively, we will update all the bundles from this list - even if some bundles will be "updated"
            // as part of feature installation
            Presentation.displayBundleUpdates(updatesForBundleKeys.values(), true);

            // now, if we're installing rollup patch, we just restart with clean cache
            // then required repositories, features and bundles will be reinstalled
            if (kind == PatchKind.ROLLUP) {
                if (!simulate) {
                    if (patches.size() == 1) {
                        Patch patch = patches.iterator().next();
                        PatchResult result = results.get(patch.getPatchData().getId());

                        // backup all datafiles of all bundles - we we'll backup configadmin configurations in
                        // single shot
                        if (patchManagement.isStandaloneChild()) {
                            backupService.backupDataFiles(result.getChildPatches().get(System.getProperty("karaf.name")), Pending.ROLLUP_INSTALLATION);
                        } else {
                            backupService.backupDataFiles(result, Pending.ROLLUP_INSTALLATION);
                        }

                        for (Bundle b : coreBundles.values()) {
                            if (b.getSymbolicName() != null
                                    && Utils.stripSymbolicName(b.getSymbolicName()).equals("org.apache.felix.fileinstall")) {
                                b.stop(Bundle.STOP_TRANSIENT);
                                break;
                            }
                        }

                        // update KARAF_HOME
                        patchManagement.commitInstallation(transaction);

                        if (patchManagement.isStandaloneChild()) {
                            result.getChildPatches().get(System.getProperty("karaf.name")).setPending(Pending.ROLLUP_INSTALLATION);
                        } else {
                            result.setPending(Pending.ROLLUP_INSTALLATION);
                        }
                        result.store();

                        // Some updates need a full JVM restart.
                        if (isJvmRestartNeeded(results)) {
                            boolean handlesFullRestart = Boolean.getBoolean("karaf.restart.jvm.supported");
                            if (handlesFullRestart) {
                                System.out.println("Rollup patch " + patch.getPatchData().getId() + " installed. Restarting Karaf..");
                                // KARAF-5179 - we need both properties set to true
                                System.setProperty("karaf.restart", "true");
                                System.setProperty("karaf.restart.jvm", "true");
                            } else {
                                System.out.println("Rollup patch " + patch.getPatchData().getId() + " installed. Shutting down Karaf, please restart...");
                            }
                        } else {
                            // We don't need a JVM restart, so lets just do a OSGi framework restart
                            System.setProperty("karaf.restart", "true");
                        }

                        File karafData = new File(bundleContext.getProperty("karaf.data"));
                        File cleanCache = new File(karafData, "clean_cache");
                        cleanCache.createNewFile();
                        Thread.currentThread().setContextClassLoader(bundleContext.getBundle(0L).adapt(BundleWiring.class).getClassLoader());
                        bundleContext.getBundle(0L).stop();
                        // stop/shutdown occurs on another thread
                    }
                } else {
                    System.out.println("Simulation only - no files and runtime data will be modified.");
                    patchManagement.rollbackInstallation(transaction);
                }

                return results;
            }

            // continue with NON_ROLLUP patch

            // update KARAF_HOME
            if (!simulate) {
                patchManagement.commitInstallation(transaction);
            } else {
                patchManagement.rollbackInstallation(transaction);
            }

            if (!simulate) {
                try {
                    // load classes required a bit later - needed in case our bundle gets refreshed
                    getClass().getClassLoader().loadClass(PatchResult.class.getName());
                    getClass().getClassLoader().loadClass(PatchReport.class.getName());
                    getClass().getClassLoader().loadClass(FeatureUpdate.class.getName());
                } catch (Throwable ignored) {
                }

                Runnable task = () -> {
                    try {
                        // update bundles
                        applyChanges(bundleUpdateLocations, toReinstall);

                        for (String featureOverride : overridesForFeatureKeys) {
                            System.out.println("overriding feature: " + featureOverride);
                        }
                        if (featuresService != null
                                && (overridesForFeatureKeys.size() > 0 || updatesForBundleKeys.size() > 0)) {
                            System.out.println("refreshing features");
                            try {
                                featuresService.refreshFeatures(EnumSet.noneOf(FeaturesService.Option.class));
                            } catch (Throwable throwable) {
                                System.out.println("Problem refreshing features (it is expected when patching bundles used by Karaf's feature service bundle)");
                            }
                        }

                        // persist results of all installed patches
                        for (Patch patch : patches) {
                            PatchResult result = results.get(patch.getPatchData().getId());

                            System.out.printf("Summary of patch %s:%n", patch.getPatchData().getId());
                            PatchReport report = patch.getResult().getReport();
                            System.out.printf(" - Bundles updated: %d%n", report.getUpdatedBundles());
                            System.out.printf(" - Features updated: %d%n", report.getUpdatedFeatures());
                            System.out.printf(" - Features removed: %d%n", report.getRemovedFeatures());
                            System.out.printf(" - Features overriden: %d%n", report.getOverridenFeatures());
                            System.out.flush();

                            result.store();
                        }

                        // Some updates need a full JVM restart - we didn't do it before ENTESB-15538 for HF patches
                        if (isJvmRestartNeeded(results)) {
                            boolean handlesFullRestart = Boolean.getBoolean("karaf.restart.jvm.supported");
                            if (handlesFullRestart) {
                                if (patches.size() == 1) {
                                    System.out.println("Patch " + patches.iterator().next().getPatchData().getId() + " installed. Restarting Karaf..");
                                } else {
                                    System.out.println(patches.size() + " patches installed. Restarting Karaf..");
                                }
                                // KARAF-5179 - we need both properties set to true
                                System.setProperty("karaf.restart", "true");
                                System.setProperty("karaf.restart.jvm", "true");

                                Thread.currentThread().setContextClassLoader(bundleContext.getBundle(0L).adapt(BundleWiring.class).getClassLoader());
                                bundleContext.getBundle(0L).stop();
                            } else {
                                if (patches.size() == 1) {
                                    System.out.println("Patch " + patches.iterator().next().getPatchData().getId() + " installed. Please restart Karaf.");
                                } else {
                                    System.out.println(patches.size() + " patches installed. Please restart Karaf.");
                                }
                            }
                            System.out.flush();
                        }
                    } catch (Exception e) {
                        e.printStackTrace(System.err);
                        System.err.flush();
                    }
                };
                if (synchronous) {
                    task.run();
                } else {
                    new Thread(task).start();
                }
            } else {
                System.out.println("Simulation only - no files and runtime data will be modified.");
            }

            return results;
        } catch (Exception e) {
            e.printStackTrace(System.err);
            System.err.flush();

            if (transaction != null && patchManagement != null) {
                patchManagement.rollbackInstallation(transaction);
            }
            throw new PatchException(e.getMessage(), e);
        } finally {
            System.out.flush();
        }
    }

    private boolean isJvmRestartNeeded(Map<String, PatchResult> results) {
        for (PatchResult result : results.values()) {
            if (isJvmRestartNeeded(result)) {
                return true;
            }
        }
        return false;
    }

    private boolean isJvmRestartNeeded(PatchResult result) {
        for (String file : result.getPatchData().getFiles()) {
            if (file.startsWith("lib/") || file.equals("etc/jre.properties")) {
                return true;
            }
        }
        return false;
    }

    /**
     * Returns a list of {@link BundleUpdate} for single patch, taking into account already discovered updates
     * @param patch
     * @param allBundles
     * @param bundleUpdateLocations out parameter that gathers update locations for bundles across patches
     * @param toReinstall
     * @param history
     * @param updatesForBundleKeys
     * @param kind
     * @param coreBundles
     * @param featureUpdatesInThisPatch
     * @return
     * @throws IOException
     */
    private List<BundleUpdate> bundleUpdatesInPatch(Patch patch,
                                                    Bundle[] allBundles,
                                                    Map<Bundle, String> bundleUpdateLocations,
                                                    Set<Bundle> toReinstall,
                                                    BundleVersionHistory history,
                                                    Map<String, BundleUpdate> updatesForBundleKeys,
                                                    PatchKind kind,
                                                    Map<String, Bundle> coreBundles,
                                                    List<FeatureUpdate> featureUpdatesInThisPatch) throws Exception {

        List<BundleUpdate> updatesInThisPatch = new LinkedList<>();

        // for ROLLUP patch we can check which bundles AREN'T updated by this patch - we have to reinstall them
        // at the same version as existing one. "no update" means "require install after clearing cache"
        // Initially all bundles need update. If we find an update in patch, we remove a key from this map
        Map<String, Bundle> updateNotRequired = new LinkedHashMap<>();
//        // let's keep {symbolic name -> list of versions} mapping
//        MultiMap<String, Version> allBundleVersions = new MultiMap<>();
        // bundle location -> bundle key (symbolic name|updateable version)
        Map<String, String> locationsOfBundleKeys = new HashMap<>();

        for (Bundle b : allBundles) {
            if (b.getSymbolicName() == null) {
                continue;
            }
            Version v = b.getVersion();
            Version updateableVersion = new Version(v.getMajor(), v.getMinor(), 0);
            String key = String.format("%s|%s", stripSymbolicName(b.getSymbolicName()), updateableVersion.toString());
            // we can't key by symbolic name only - we could miss all those Guavas installed...
            // but we definitely won't handle the situation where we have two bundles installed with the same
            // symbolic name, differing at micro version only
            if (!coreBundles.containsKey(stripSymbolicName(b.getSymbolicName()))) {
                updateNotRequired.put(key, b);
            } else {
                // let's key core (etc/startup.properties) bundles by symbolic name only - there should be only
                // one version of symbolic name
                updateNotRequired.put(stripSymbolicName(b.getSymbolicName()), b);
            }
//            allBundleVersions.put(stripSymbolicName(b.getSymbolicName()), b.getVersion());
            String location = b.getLocation();
            if (location != null && location.startsWith("mvn:") && location.contains("//")) {
                // special case for mvn:org.ops4j.pax.url/pax-url-wrap/2.4.7//uber
                location = location.replace("//", "/jar/");
            }
            locationsOfBundleKeys.put(location, key);
        }

        // let's prepare a set of bundle keys that are part of features that will be updated/reinstalled - those
        // bundle keys don't have to be reinstalled separately
        Set<String> bundleKeysFromFeatures = new HashSet<>();
        if (featureUpdatesInThisPatch != null) {
            for (FeatureUpdate featureUpdate : featureUpdatesInThisPatch) {
                if (featureUpdate.getName() != null) {
                    // this is either installation or update of single feature
                    String fName = featureUpdate.getName();
                    String fVersion = featureUpdate.getPreviousVersion();
                    Feature f = featuresService.getFeature(fName, fVersion);
                    for (BundleInfo bundleInfo : f.getBundles()) {
                        if (/*!bundleInfo.isDependency() && */locationsOfBundleKeys.containsKey(bundleInfo.getLocation())) {
                            bundleKeysFromFeatures.add(locationsOfBundleKeys.get(bundleInfo.getLocation()));
                        }
                    }
                    for (Conditional cond : f.getConditional()) {
                        for (BundleInfo bundleInfo : cond.getBundles()) {
                            if (/*!bundleInfo.isDependency() && */locationsOfBundleKeys.containsKey(bundleInfo.getLocation())) {
                                bundleKeysFromFeatures.add(locationsOfBundleKeys.get(bundleInfo.getLocation()));
                            }
                        }
                    }
                }
            }
        }

        for (String newLocation : patch.getPatchData().getBundles()) {
            // [symbolicName, version] of the new bundle
            String[] symbolicNameVersion = helper.getBundleIdentity(newLocation);
            if (symbolicNameVersion == null || symbolicNameVersion[0] == null) {
                continue;
            }
            String newSn = null;
            String existingSn = null;
            String sn = stripSymbolicName(symbolicNameVersion[0]);
            if (patch.getPatchData().getOriginalSymbolicName(newLocation) != null) {
                String oldSn = patch.getPatchData().getOriginalSymbolicName(newLocation);
                if (!oldSn.equals(sn)) {
                    existingSn = oldSn;
                    newSn = sn;
                }
            } else {
                existingSn = sn;
            }
            String vr = symbolicNameVersion[1];
            Version newVersion = VersionTable.getVersion(vr);
            Version updateableVersion = new Version(newVersion.getMajor(), newVersion.getMinor(), 0);
            // this bundle update from a patch may be applied only to relevant bundle|updateable-version, not to
            // *every* bundle with exact symbolic name
            String key = null;
            if (!coreBundles.containsKey(existingSn)) {
                key = String.format("%s|%s", existingSn, updateableVersion.toString());
            } else {
                key = existingSn;
            }

            // if existing bundle is within this range, update is possible
            VersionRange range = getUpdateableRange(patch, newLocation, newVersion);
            if (coreBundles.containsKey(existingSn)) {
                // for core bundles, we don't want to miss the update - for example fileinstall 3.4.2->3.5.0
                // so we lower down the lowest possible version of core bundle that we can update
                if (range == null) {
                    range = new VersionRange(false, Version.emptyVersion, newVersion, true);
                } else {
                    range = new VersionRange(false, Version.emptyVersion, range.getCeiling(), true);
                }
            } else if (range != null) {
                // if range is specified on non core bundle, the key should be different - updateable
                // version should be taken from range
                key = String.format("%s|%s", existingSn, range.getFloor().toString());
            }

            Bundle bundle = updateNotRequired.get(key);
            if (bundle == null && coreBundles.containsKey(existingSn)) {
                bundle = updateNotRequired.get(existingSn);
            }
            if (bundle == null || range == null) {
                // this patch ships a bundle that can't be used as an update for ANY currently installed bundle
                if (kind == PatchKind.NON_ROLLUP) {
                    // which is strange, because non rollup patches should update existing bundles...
                    if (range == null) {
                        System.err.printf("Skipping bundle %s - unable to process bundle without a version range configuration%n", newLocation);
                    } else {
                        // range is fine, we simply didn't find installed bundle at all - bundle from patch
                        // will be stored in ${karaf.default.repository}, but not used as an update
                    }
                }
                continue;
            }

            Version oldVersion = bundle.getVersion();
            if (range.contains(oldVersion)) {
                String oldLocation = history.getLocation(bundle);
                if ("org.ops4j.pax.url.mvn".equals(existingSn)) {
                    Artifact artifact = Utils.mvnurlToArtifact(newLocation, true);
                    if (artifact != null) {
                        URL location = new File(repository,
                                String.format("org/ops4j/pax/url/pax-url-aether/%1$s/pax-url-aether-%1$s.jar",
                                        artifact.getVersion())).toURI().toURL();
                        newLocation = location.toString();
                    }
                }

                int startLevel = bundle.adapt(BundleStartLevel.class).getStartLevel();
                int state = bundle.getState();

                BundleUpdate update = new BundleUpdate(existingSn, newVersion.toString(), newLocation,
                        oldVersion.toString(), oldLocation, startLevel, state);
                if (newSn != null) {
                    update.setNewSymbolicName(newSn);
                    toReinstall.add(bundle);
                }
                if (bundleKeysFromFeatures.contains(key) || coreBundles.containsKey(existingSn)) {
                    update.setIndependent(false);
                }
                updatesInThisPatch.add(update);
                updateNotRequired.remove(key);
                if (coreBundles.containsKey(existingSn)) {
                    updateNotRequired.remove(existingSn);
                }
                // Merge result
                BundleUpdate oldUpdate = updatesForBundleKeys.get(key);
                if (oldUpdate != null) {
                    Version upv = null;
                    if (oldUpdate.getNewVersion() != null) {
                        upv = VersionTable.getVersion(oldUpdate.getNewVersion());
                    }
                    if (upv == null || upv.compareTo(newVersion) < 0) {
                        // other patch contains newer update for a bundle
                        updatesForBundleKeys.put(key, update);
                        bundleUpdateLocations.put(bundle, newLocation);
                    }
                } else {
                    // this is the first update of the bundle
                    updatesForBundleKeys.put(key, update);
                    bundleUpdateLocations.put(bundle, newLocation);
                }
            }
        }

        if (kind == PatchKind.ROLLUP) {
            // we have to detect the bundles that have no available update in the patch, or at least doesn't have
            // corresponding symbolic name among bundles from patch
            // those bundles are either bundles that don't need update or areuser bundles (which may be part of
            // user features) and we have (at least try) to install them after restart.
            for (Bundle b : updateNotRequired.values()) {
                if (b.getSymbolicName() == null) {
                    continue;
                }
                String symbolicName = stripSymbolicName(b.getSymbolicName());
                Version v = b.getVersion();
                Version updateableVersion = new Version(v.getMajor(), v.getMinor(), 0);
                String key = String.format("%s|%s", symbolicName, updateableVersion.toString());
                int startLevel = b.adapt(BundleStartLevel.class).getStartLevel();
                int state = b.getState();
                BundleUpdate update = new BundleUpdate(symbolicName, null, null, v.toString(), history.getLocation(b), startLevel, state);
                if (bundleKeysFromFeatures.contains(key) || coreBundles.containsKey(symbolicName)) {
                    // we don't have to install it separately
                    update.setIndependent(false);
                }
                updatesInThisPatch.add(update);
                updatesForBundleKeys.put(key, update);
            }
        }

        return updatesInThisPatch;
    }

    /**
     * Returns a list of {@link FeatureUpdate} for single patch, taking into account already discovered updates
     * @param patch
     * @param updatesForFeatureKeys
     * @param kind
     * @return
     */
    private List<FeatureUpdate> featureUpdatesInPatch(Patch patch,
                                                      Map<String, FeatureUpdate> updatesForFeatureKeys,
                                                      PatchKind kind) throws Exception {
        Set<String> addedRepositoryNames = new HashSet<>();
        HashMap<String, Repository> after = null;
        try {
            List<FeatureUpdate> updatesInThisPatch = new LinkedList<>();

            /*
             * Two pairs of features makes feature names not enough to be a key:
             * <feature name="openjpa" description="Apache OpenJPA 2.2.x persistent engine support" version="2.2.2" resolver="(obr)">
             * <feature name="openjpa" description="Apache OpenJPA 2.3.x persistence engine support" version="2.3.0" resolver="(obr)">
             * and
             * <feature name="activemq-camel" version="5.11.0.redhat-621039" resolver="(obr)" start-level="50">
             * <feature name="activemq-camel" version="1.2.0.redhat-621039" resolver="(obr)">
             */

            // install the new feature repos, tracking the set the were
            // installed before and after
            // (e.g, "karaf-enterprise-2.4.0.redhat-620133" -> Repository)
            Map<String, Repository> before = new HashMap<>(getAvailableFeatureRepositories());
            for (String url : patch.getPatchData().getFeatureFiles()) {
                featuresService.addRepository(new URI(url));
            }
            after = getAvailableFeatureRepositories();

            // versionless mvn: URI to full mvn: URI
            Map<String, String> existingRepositoryGroupAndArtifactIds = new HashMap<>();
            for (String uri : before.keySet()) {
                Artifact a = Utils.mvnurlToArtifact(uri, true);
                if (a != null) {
                    existingRepositoryGroupAndArtifactIds.put(String.format("%s/%s", a.getGroupId(), a.getArtifactId()), uri);
                }
            }

            // track which old repos provide which features to find out if we have new repositories for those features
            // key is name|version (don't expect '|' to be part of name...)
            // assume that [feature-name, feature-version{major,minor,0,0}] is defined only in single repository
            Map<String, String> featuresInOldRepositories = new HashMap<>();
            // key is only name, without version - used when there's single feature in old and in new repositories
            MultiMap<String, String> singleFeaturesInOldRepositories = new MultiMap<>();
            Map<String, Version> actualOldFeatureVersions = new HashMap<>();

            for (Repository existingRepository : before.values()) {
                for (Feature feature : existingRepository.getFeatures()) {
                    Version v = Utils.getOsgiVersion(feature.getVersion());
                    Version lowestUpdateableVersion = new Version(v.getMajor(), v.getMinor(), 0);
                    // assume that we can update feature XXX-2.2.3 to XXX-2.2.142, but not to XXX-2.3.0.alpha-1
                    String key = String.format("%s|%s", feature.getName(), lowestUpdateableVersion.toString());
                    featuresInOldRepositories.put(key, existingRepository.getURI().toString());
                    singleFeaturesInOldRepositories.put(feature.getName(), existingRepository.getURI().toString());
                    actualOldFeatureVersions.put(key, v);
                }
            }

            // Use the before and after set to figure out which repos were added.
            addedRepositoryNames = new HashSet<>(after.keySet());
            addedRepositoryNames.removeAll(before.keySet());

            // By checking groupId and artifactId we can check which entire repositories were updated
            Map<String, String> updatedRepositories = new HashMap<>();
            for (String existing : before.keySet()) {
                // first there's no update (key -> null)
                updatedRepositories.put(existing, null);
            }
            for (String uri : addedRepositoryNames) {
                Artifact a = Utils.mvnurlToArtifact(uri, true);
                if (a != null) {
                    String versionless = String.format("%s/%s", a.getGroupId(), a.getArtifactId());
                    if (existingRepositoryGroupAndArtifactIds.containsKey(versionless)) {
                        updatedRepositories.put(existingRepositoryGroupAndArtifactIds.get(versionless), uri);
                    }
                }
            }


            // track the new repositories where we can find old features
            Map<String, String> featuresInNewRepositories = new HashMap<>();
            MultiMap<String, String> singleFeaturesInNewRepositories = new MultiMap<>();
            Map<String, String> actualNewFeatureVersions = new HashMap<>();
            MultiMap<String, String> singleActualNewFeatureVersions = new MultiMap<>();

            // Figure out which old repos were updated:  Do they have feature
            // with the same name as one contained in a repo being added?
            // and do they have update'able version? (just like with bundles)
            Set<String> oldRepositoryNames = new HashSet<String>();
            for (String addedRepositoryName : addedRepositoryNames) {
                Repository added = after.get(addedRepositoryName);
                for (Feature feature : added.getFeatures()) {
                    Version v = Utils.getOsgiVersion(feature.getVersion());
                    Version lowestUpdateableVersion = new Version(v.getMajor(), v.getMinor(), 0);
                    String key = String.format("%s|%s", feature.getName(), lowestUpdateableVersion.toString());
                    featuresInNewRepositories.put(key, addedRepositoryName);
                    singleFeaturesInNewRepositories.put(feature.getName(), addedRepositoryName);
                    actualNewFeatureVersions.put(key, v.toString());
                    singleActualNewFeatureVersions.put(feature.getName(), v.toString());

                    String oldRepositoryWithUpdateableFeature = featuresInOldRepositories.get(key);
                    if (oldRepositoryWithUpdateableFeature == null
                            && singleFeaturesInOldRepositories.get(feature.getName()) != null
                            && singleFeaturesInOldRepositories.get(feature.getName()).size() == 1) {
                        oldRepositoryWithUpdateableFeature = singleFeaturesInOldRepositories.get(feature.getName()).get(0);
                    }
                    if (oldRepositoryWithUpdateableFeature != null) {
                        // track the old repository to be removed
                        oldRepositoryNames.add(oldRepositoryWithUpdateableFeature);
                    }
                }
            }

            // Now we know which are the old repos that have been udpated.
            // again assume that we can find ALL of the features from this old repository in a new repository
            // We need to uninstall them. Before we uninstall, track which features were installed.
            for (String oldRepositoryName : oldRepositoryNames) {
                Repository repository = before.get(oldRepositoryName);
                for (Feature feature : repository.getFeatures()) {
                    if (featuresService.isInstalled(feature)) {
                        Version v = Utils.getOsgiVersion(feature.getVersion());
                        Version lowestUpdateableVersion = new Version(v.getMajor(), v.getMinor(), 0);
                        String key = String.format("%s|%s", feature.getName(), lowestUpdateableVersion.toString());
                        String newRepositoryName = featuresInNewRepositories.get(key);
                        String newVersion = actualNewFeatureVersions.get(key);
                        if (newRepositoryName == null) {
                            // try looking up the feature without version - e.g., like in updating "transaction"
                            // feature from 1.1.1 to 1.3.0
                            if (singleFeaturesInOldRepositories.get(feature.getName()) != null
                                    && singleFeaturesInOldRepositories.get(feature.getName()).size() == 1
                                    && singleFeaturesInNewRepositories.get(feature.getName()) != null
                                    && singleFeaturesInNewRepositories.get(feature.getName()).size() == 1) {
                                newRepositoryName = singleFeaturesInNewRepositories.get(feature.getName()).get(0);
                            }
                        }
                        if (newVersion == null) {
                            if (singleActualNewFeatureVersions.get(feature.getName()) != null
                                    && singleActualNewFeatureVersions.get(feature.getName()).size() == 1) {
                                newVersion = singleActualNewFeatureVersions.get(feature.getName()).get(0);
                            }
                        }
                        FeatureUpdate featureUpdate = null;
                        if (newVersion != null && newRepositoryName != null) {
                            featureUpdate = new FeatureUpdate(feature.getName(),
                                    after.get(oldRepositoryName).getURI().toString(),
                                    feature.getVersion(),
                                    after.get(newRepositoryName).getURI().toString(),
                                    newVersion);
                        } else {
                            // we didn't find an update for installed features among feature repositories from patch
                            // which means we have to preserve both the feature and the repository - this may
                            // be user's feature
                            // ENTESB-9155, ENTESB-9213: but we have to check if the feature was actually
                            // removed when feature repository was updated
                            // a feature update with new repository set, but without new version is meant
                            // to mean "feature removed"
                            featureUpdate = new FeatureUpdate(feature.getName(),
                                    after.get(oldRepositoryName).getURI().toString(),
                                    feature.getVersion(),
                                    updatedRepositories.get(oldRepositoryName),
                                    null);
                        }
                        updatesInThisPatch.add(featureUpdate);
                        // Merge result
                        FeatureUpdate oldUpdate = updatesForFeatureKeys.get(key);
                        if (oldUpdate != null) {
                            Version upv = null;
                            Version newV = null;
                            if (oldUpdate.getNewVersion() != null) {
                                upv = VersionTable.getVersion(oldUpdate.getNewVersion());
                            }
                            if (newVersion != null) {
                                newV = VersionTable.getVersion(newVersion);
                            }
                            if (upv == null && newV == null) {
                                // weird...
                            } else {
                                if (upv == null || (newV != null && upv.compareTo(newV) < 0)) {
                                    // other patch contains newer update for the feature
                                    updatesForFeatureKeys.put(key, featureUpdate);
                                }
                            }
                        } else {
                            // this is the first update of the bundle
                            updatesForFeatureKeys.put(key, featureUpdate);
                        }
                    }
                }
            }

            // now let's see if there are repositories that are NOT updated (either they're not available in patch
            // (like user feature repositories) or simply didn't change (like jclouds 1.8.1 between Fuse 6.2 and 6.2.1)
            Set<String> unchangedRepositoryNames = new HashSet<>(before.keySet());
            unchangedRepositoryNames.removeAll(oldRepositoryNames);
            for (String unchangedRepositoryName : unchangedRepositoryNames) {
                Repository repository = before.get(unchangedRepositoryName);
                boolean hasInstalledFeatures = false;
                for (Feature feature : repository.getFeatures()) {
                    if (featuresService.isInstalled(feature)) {
                        FeatureUpdate featureUpdate = new FeatureUpdate(feature.getName(),
                                after.get(unchangedRepositoryName).getURI().toString(),
                                feature.getVersion(),
                                null,
                                null);
                        hasInstalledFeatures = true;
                        // preserve unchanged/user feature - install after restart
                        updatesInThisPatch.add(featureUpdate);
                        // the key doesn't matter
                        updatesForFeatureKeys.put(String.format("%s|%s", feature.getName(), feature.getVersion()),
                                featureUpdate);
                    }
                }
                if (!hasInstalledFeatures) {
                    // we have to preserve unchanged/user feature repository - even if it had no installed features
                    // this featureUpdate means - "restore feature repository only"
                    FeatureUpdate featureUpdate = new FeatureUpdate(null,
                            after.get(unchangedRepositoryName).getURI().toString(),
                            null,
                            null,
                            null);
                    updatesInThisPatch.add(featureUpdate);
                    updatesForFeatureKeys.put(String.format("REPOSITORY_TO_ADD:%s", after.get(unchangedRepositoryName).getURI().toString()),
                            featureUpdate);
                }
            }

            return updatesInThisPatch;
        } catch (Exception e) {
            throw new PatchException(e.getMessage(), e);
        } finally {
            // we'll add new feature repositories again later. here we've added them only to track the updates
            if (after != null) {
                for (String repo : addedRepositoryNames) {
                    if (after.get(repo) != null) {
                        featuresService.removeRepository(after.get(repo).getURI(), false);
                    }
                }
            }
        }
    }

    /**
     * Returns a list of feature identifiers specified in P-Patch' {@code org.apache.karaf.features.xml}
     * @param patch
     * @param kind
     * @return
     */
    private List<String> featureOverridesInPatch(Patch patch, PatchKind kind) throws Exception {
        List<String> overridesInThisPatch = new LinkedList<>();

        if (patch.getPatchData() != null && patch.getPatchData().getFeatureOverrides() != null) {
            overridesInThisPatch.addAll(patch.getPatchData().getFeatureOverrides());
        }

        return overridesInThisPatch;
    }

    static class MultiMap<K, V> {

        HashMap<K, ArrayList<V>> delegate = new HashMap<>();

        public List<V> get(Object key) {
            return delegate.get(key);
        }

        public void put(K key, V value) {
            ArrayList<V> list = delegate.computeIfAbsent(key, k -> new ArrayList<>());
            list.add(value);
        }
    }

    /**
     * Returns currently installed feature repositories. If patch is not installed, we should have the same state
     * before&amp;after.
     * @return
     */
    private HashMap<String, Repository> getAvailableFeatureRepositories() throws Exception {
        HashMap<String, Repository> before = new HashMap<String, Repository>();
        if (featuresService != null) {
            for (Repository repository : featuresService.listRepositories()) {
                before.put(repository.getURI().toString(), repository);
            }
        }
        return before;
    }

    @Override
    public void rollback(final Patch patch, boolean simulate, boolean force) throws PatchException {
        final PatchResult result = !patchManagement.isStandaloneChild() ? patch.getResult()
                : patch.getResult().getChildPatches().get(System.getProperty("karaf.name"));

        if (result == null) {
            throw new PatchException("Patch " + patch.getPatchData().getId() + " is not installed");
        }

        if (patch.getPatchData().isRollupPatch()) {
            // we already have the "state" (feature repositories, features, bundles and their states, datafiles
            // and start-level info) stored in *.result file

            Presentation.displayFeatureUpdates(result.getFeatureUpdates(), false);
            Presentation.displayBundleUpdates(result.getBundleUpdates(), false);

            try {
                if (!simulate) {
                    // let's backup data files before configadmin detects changes to etc/* files.
                    backupService.backupDataFiles(result, Pending.ROLLUP_ROLLBACK);

                    for (Bundle b : this.bundleContext.getBundles()) {
                        if (b.getSymbolicName() != null
                                && Utils.stripSymbolicName(b.getSymbolicName()).equals("org.apache.felix.fileinstall")) {
                            b.stop(Bundle.STOP_TRANSIENT);
                            break;
                        }
                    }

                    patchManagement.rollback(patch.getPatchData());
                    result.setPending(Pending.ROLLUP_ROLLBACK);
                    if (patchManagement.isStandaloneChild()) {
                        result.getParent().store();
                    } else {
                        result.store();
                    }

                    if (isJvmRestartNeeded(result)) {
                        boolean handlesFullRestart = Boolean.getBoolean("karaf.restart.jvm.supported");
                        if (handlesFullRestart) {
                            System.out.println("Rollup patch " + patch.getPatchData().getId() + " rolled back. Restarting Karaf..");
                            // KARAF-5179 - we need both properties set to true
                            System.setProperty("karaf.restart", "true");
                            System.setProperty("karaf.restart.jvm", "true");
                        } else {
                            System.out.println("Rollup patch " + patch.getPatchData().getId() + " rolled back. Shutting down Karaf, please restart...");
                        }
                    } else {
                        // We don't need a JVM restart, so lets just do a OSGi framework restart
                        System.setProperty("karaf.restart", "true");
                    }

                    File karafData = new File(bundleContext.getProperty("karaf.data"));
                    File cleanCache = new File(karafData, "clean_cache");
                    cleanCache.createNewFile();
                    Thread.currentThread().setContextClassLoader(bundleContext.getBundle(0L).adapt(BundleWiring.class).getClassLoader());
                    bundleContext.getBundle(0L).stop();
                    // stop/shutdown occurs on another thread
                    return;
                } else {
                    System.out.println("Simulation only - no files and runtime data will be modified.");
                    return;
                }
            } catch (Exception e) {
                e.printStackTrace(System.err);
                System.err.flush();
                throw new PatchException(e.getMessage(), e);
            }
        }

        // continue with NON_ROLLUP patch

        // current state of the framework
        Bundle[] allBundles = bundleContext.getBundles();

        // check if all the bundles that were updated in patch are available (installed)
        List<BundleUpdate> badUpdates = new ArrayList<BundleUpdate>();
        for (BundleUpdate update : result.getBundleUpdates()) {
            boolean found = false;
            Version v = Version.parseVersion(update.getNewVersion() == null ? update.getPreviousVersion() : update.getNewVersion());
            for (Bundle bundle : allBundles) {
                if (bundle.getSymbolicName() == null || update.getSymbolicName() == null) {
                    continue;
                }
                String sn = update.getSymbolicName();
                if (update.getNewSymbolicName() != null) {
                    sn = update.getNewSymbolicName();
                }
                if (stripSymbolicName(bundle.getSymbolicName()).equals(stripSymbolicName(sn))
                        && bundle.getVersion().equals(v)) {
                    found = true;
                    break;
                }
            }
            if (!found) {
                badUpdates.add(update);
            }
        }
        if (!badUpdates.isEmpty() && !force) {
            StringBuilder sb = new StringBuilder();
            sb.append("Unable to rollback patch ").append(patch.getPatchData().getId()).append(" because of the following missing bundles:\n");
            for (BundleUpdate up : badUpdates) {
                String version = up.getNewVersion() == null ? up.getPreviousVersion() : up.getNewVersion();
                sb.append(" - ").append(up.getSymbolicName()).append("/").append(version).append("\n");
            }
            throw new PatchException(sb.toString());
        }

        if (!simulate) {
            // bundle -> old location of the bundle to downgrade from
            final Map<Bundle, String> toUpdate = new HashMap<Bundle, String>();
            // bundles that has to be reinstalled because of different symbolic name in patch
            final Set<Bundle> toReinstall = new HashSet<Bundle>();
            for (BundleUpdate update : result.getBundleUpdates()) {
                Version v = Version.parseVersion(update.getNewVersion() == null ? update.getPreviousVersion() : update.getNewVersion());
                for (Bundle bundle : allBundles) {
                    if (bundle.getSymbolicName() == null || update.getSymbolicName() == null) {
                        continue;
                    }
                    String sn = update.getSymbolicName();
                    if (update.getNewSymbolicName() != null) {
                        sn = update.getNewSymbolicName();
                        toReinstall.add(bundle);
                    }
                    if (stripSymbolicName(bundle.getSymbolicName()).equals(stripSymbolicName(sn))
                            && bundle.getVersion().equals(v)) {
                        toUpdate.put(bundle, update.getPreviousLocation());
                    }
                }
            }

            final boolean isStandaloneChild = patchManagement.isStandaloneChild();
            patchManagement.rollback(patch.getPatchData());

            Executors.newSingleThreadExecutor().execute(() -> {
                try {
                    applyChanges(toUpdate, toReinstall);

                    for (String featureOverride : result.getFeatureOverrides()) {
                        System.out.println("removing overriden feature: " + featureOverride);
                    }
                    if (featuresService != null && result.getFeatureOverrides().size() > 0
                            || toUpdate.size() > 0) {
                        System.out.println("refreshing features");
                        featuresService.refreshFeatures(EnumSet.noneOf(FeaturesService.Option.class));
                    }
                } catch (Exception e) {
                    throw new PatchException("Unable to rollback patch " + patch.getPatchData().getId() + ": " + e.getMessage(), e);
                }
                try {
                    List<String> bases = patch.getResult().getKarafBases();
                    bases.removeIf(s -> s.startsWith(System.getProperty("karaf.name")));
                    patch.getResult().store();
                    if (patch.getResult().getKarafBases().size() == 0) {
                        File file = new File(patchDir, result.getPatchData().getId() + ".patch.result");
                        file.delete();
                        patch.setResult(null);
                    }
                    if (patchManagement.isStandaloneChild()) {
                        File file = new File(patchDir, result.getPatchData().getId() + "." + System.getProperty("karaf.name") + ".patch.result");
                        if (file.isFile()) {
                            file.delete();
                        }
                    }
                } catch (Exception e) {
                    LOG.warn("Problem updating metadata for patch \"" + patch.getPatchData().getId() + "\": " + e.getMessage());
                }


                // Some updates need a full JVM restart - we didn't do it before ENTESB-15538 for HF patches
                if (isJvmRestartNeeded(result)) {
                    boolean handlesFullRestart = Boolean.getBoolean("karaf.restart.jvm.supported");
                    if (handlesFullRestart) {
                        System.out.println("Patch " + result.getPatchData().getId() + " rolled back. Restarting Karaf..");
                        // KARAF-5179 - we need both properties set to true
                        System.setProperty("karaf.restart", "true");
                        System.setProperty("karaf.restart.jvm", "true");

                        Thread.currentThread().setContextClassLoader(bundleContext.getBundle(0L).adapt(BundleWiring.class).getClassLoader());
                        try {
                            bundleContext.getBundle(0L).stop();
                        } catch (Exception e) {
                            e.printStackTrace(System.err);
                            System.err.flush();
                        }
                    } else {
                        System.out.println("Patch " + result.getPatchData().getId() + " rolled back. Please restart Karaf.");
                    }
                    System.out.flush();
                }
            });
        }
    }

    @Override
    public void autoDeployPatches() {
        // to prevent reading descriptors all over again, we'll list the FUSE_HOME/patches directory
        // and check timestamps of the ZIP files
        File[] zips = patchDir.listFiles(f -> {
            return f.isFile() && f.getName().endsWith(".zip");
        });
        if (zips == null) {
            // should not happen
            return;
        }

        // after calling this method we'll have proper state in this.deployedPatches, but we have to
        // check if any patch needs adding/updating. Removal will happen automatically.
        boolean changed = refreshAutoDeployCache(zips);

        for (Map.Entry<String, DeployedPatch> e : deployedPatches.entrySet()) {
            String name = e.getKey();
            DeployedPatch dp = e.getValue();
            if (dp.hasChanged()) {
                changed = true;
                File zip = dp.getZipFile();
                boolean skip = false;
                if (dp.getTimestamp() == 0L) {
                    // new patch to be added
                    LOG.info("Found new patch to deploy: {}", zip.getName());
                } else {
                    // zip that was already added, but maybe it was updated
                    LOG.info("Patch was updated: {}", zip.getName());
                    String id = dp.getPatchData().getId();
                    Patch patch = patchManagement.loadPatch(new PatchDetailsRequest(id));
                    if (patch != null) {
                        if (patch.getResult() != null && patch.getResult().getKarafBases().size() > 0) {
                            String containers = String.join(", ", patch.getResult().getKarafBases());
                            LOG.warn("Patch {} (from file {}) is already installed for these containers: {}, and can't" +
                                            " be updated. Please don't overwrite auto-deployed and installed patch.",
                                    id, name, containers);
                            skip = true;
                        } else {
                            LOG.info("Deleting existing auto-deployed patch from {}", name);
                            patchManagement.delete(patch);
                        }
                    }
                }

                if (!skip) {
                    // whether it was added or updated, we should fetch+track it now
                    try {
                        List<PatchData> pdList = patchManagement.fetchPatches(zip.toURI().toURL());
                        if (pdList.size() != 1) {
                            LOG.warn("Multi-patch archive {} is not supported", zip.getName());
                            continue;
                        }
                        dp.setPatchData(pdList.get(0));
                    } catch (MalformedURLException ignored) {
                    }
                    patchManagement.trackPatch(dp.getPatchData());
                }
                dp.setTimestamp(dp.getZipFile().lastModified());
            }
        }

        if (changed) {
            persistAutoDeployCache();
        }
    }

    /**
     * This method synchronizes runtime information about auto-deployed patches and .management/auto-deploy.txt file
     * @param zips
     * @return
     */
    private boolean refreshAutoDeployCache(File[] zips) {
        // There are three sets:
        // - .management/auto-deploy.txt - autodeployed (some time ago) patches
        // - passed zips - current list of ZIPs in FUSE_HOME/patches
        // - this.deployedPatches - current runtime state that should match .management/auto-deploy.txt but:
        //    - may be empty when patch-core bundle starts/refreshes
        //    - may contain more entries if user deleted a ZIP from FUSE_HOME/patches

        final boolean[] changed = { false };
        File cache = new File(patchDir, ".management/auto-deploy.txt");

        Map<String, String> removed = new HashMap<>();
        deployedPatches.forEach((name, patch) -> {
            // potentially all are to be removed if the ZIPs are no longer there
            removed.put(name, patch.getPatchData().getId());
        });
        Map<String, File> added = new HashMap<>();
        for (File zip : zips) {
            // potentially all ZIPs are to be added, or at least checked if they should be added/updated
            added.put(zip.getName(), zip);
        }

        if (!cache.isFile()) {
            // all zips are to be added, no patches should be removed
            added.forEach((name, patch) -> {
                deployedPatches.put(name, new DeployedPatch(patch, 0L));
            });
            // don't write here - just return a flag that the cache has to be written
            changed[0] = true;
        } else {
            try {
                List<String> lines = FileUtils.readLines(cache, StandardCharsets.UTF_8);
                lines.forEach(l -> {
                    if (!l.startsWith("#")) {
                        String[] entry = l.trim().split(Pattern.quote(File.separator));
                        String name = entry[0];
                        String id = entry[1];
                        // timestamp at which it was last added+tracked
                        long ts = Long.parseLong(entry[2]);

                        if (added.containsKey(name)) {
                            // it was once added+tracked, but maybe it was changed
                            if (!deployedPatches.containsKey(name)) {
                                // just file -> runtime sync
                                deployedPatches.put(name, new DeployedPatch(added.get(name), ts));
                            } else {
                                // explicitly re-set to persisted timestamp to detect a change later
                                deployedPatches.get(name).setTimestamp(ts);
                            }
                            DeployedPatch dp = deployedPatches.get(name);
                            Patch patch = patchManagement.loadPatch(new PatchDetailsRequest(id));
                            if (patch == null) {
                                LOG.warn("Missing patch referenced in patch cache (patch id={})", id);
                                deployedPatches.remove(name);
                                changed[0] = true;
                            } else {
                                dp.setPatchData(patch.getPatchData());
                            }
                            // we don't want to remove it, but when updating we'll remove + add it anyway
                            removed.remove(name, id);
                            // remove from "added", so it can only be updated if needed
                            added.remove(name);
                        } else {
                            // it was stored in the cache file, but the ZIP is no longer there and even if it may
                            // have not been kept in this.deployedPatches ...
                            deployedPatches.remove(name);
                            // ..., we have to ensure it's untracked from Git
                            removed.put(name, id);
                            changed[0] = true;
                        }
                    }
                });
            } catch (IOException e) {
                LOG.warn("Problem processing patch cache file: {}", e.getMessage(), e);
            }
        }

        if (removed.size() > 0) {
            // there are zips once deployed, but no longer available as ZIP files inside FUSE_HOME/patches
            removed.forEach((name, id) -> {
                Patch patch = patchManagement.loadPatch(new PatchDetailsRequest(id));
                if (patch != null) {
                    if (patch.getResult() != null && patch.getResult().getKarafBases().size() > 0) {
                        String containers = String.join(", ", patch.getResult().getKarafBases());
                        LOG.warn("Patch {} (from file {}) is no longer available, but it was used to patch these containers: {}",
                                id, name, containers);
                    } else {
                        LOG.info("Removing information about auto deployed patch with id={} (original patch file: {})",
                                id, name);
                        patchManagement.delete(patch);
                    }
                }
            });
            changed[0] = true;
        }

        if (added.size() > 0) {
            // there are zips added, which were not yet tracked in .management/auto-deploy.txt
            added.forEach((name, file) -> {
                if (!deployedPatches.containsKey(name)) {
                    deployedPatches.put(name, new DeployedPatch(added.get(name), 0L));
                } else {
                    // this should never happen...
                    deployedPatches.get(name).setTimestamp(0L);
                }
            });
            changed[0] = true;
        }

        // not adding new ZIPs here, but in autoDeployPatches()
        return changed[0];
    }

    @Override
    public void undeploy(Patch patch) {
        for (Iterator<DeployedPatch> iterator = deployedPatches.values().iterator(); iterator.hasNext(); ) {
            DeployedPatch dp = iterator.next();
            if (dp.getPatchData().getId().equals(patch.getPatchData().getId())) {
                iterator.remove();
                LOG.info("Deleting {} patch file", dp.getZipFile());
                dp.getZipFile().delete();
            }
        }

        persistAutoDeployCache();
    }

    private void persistAutoDeployCache() {
        File cache = new File(patchDir, ".management/auto-deploy.txt");

        List<String> content = new ArrayList<>(deployedPatches.size() + 1);
        content.add("# generated by Fuse patching mechanism");
        deployedPatches.forEach((name, patch) -> {
            content.add(String.format("%s%s%s%s%d", name, File.separator, patch.getPatchData().getId(),
                    File.separator, patch.getZipFile().lastModified()));
        });
        try {
            FileUtils.writeLines(cache, content);
        } catch (IOException e) {
            LOG.warn("Problem writing patch cache file: {}", e.getMessage(), e);
        }
    }

    /**
     * <p>Returns a {@link VersionRange} that existing bundle has to satisfy in order to be updated to
     * <code>newVersion</code></p>
     * <p>If we're upgrading to <code>1.2.3</code>, existing bundle has to be in range
     * <code>[1.2.0,1.2.3)</code></p>
     * @param patch
     * @param url
     * @param newVersion
     * @return
     */
    private VersionRange getUpdateableRange(Patch patch, String url, Version newVersion) {
        VersionRange range = null;
        if (patch.getPatchData().getVersionRange(url) == null) {
            // default version range starts with x.y.0 as the lower bound
            Version lower = new Version(newVersion.getMajor(), newVersion.getMinor(), 0);

            // We can't really upgrade with versions such as 2.1.0
            if (newVersion.compareTo(lower) > 0) {
                range = new VersionRange(false, lower, newVersion, true);
            }
        } else {
            range = new VersionRange(patch.getPatchData().getVersionRange(url));
        }

        return range;
    }

    private File getPatchStorage(Patch patch) {
        return new File(patchDir, patch.getPatchData().getId());
    }

    private void applyChanges(Map<Bundle, String> toUpdate, Set<Bundle> toReinstall) throws BundleException, IOException {
        List<Bundle> toStop = new ArrayList<Bundle>();
        Map<Bundle, String> lessToUpdate = new HashMap<>();
        for (Bundle b : toUpdate.keySet()) {
            if (b.getState() != Bundle.UNINSTALLED) {
                toStop.add(b);
                lessToUpdate.put(b, toUpdate.get(b));
            }
        }
        while (!toStop.isEmpty()) {
            List<Bundle> bs = getBundlesToDestroy(toStop);
            for (Bundle bundle : bs) {
                String hostHeader = bundle.getHeaders().get(Constants.FRAGMENT_HOST);
                if (hostHeader == null && (bundle.getState() == Bundle.ACTIVE || bundle.getState() == Bundle.STARTING)) {
                    if (!"org.ops4j.pax.url.mvn".equals(bundle.getSymbolicName())) {
                        bundle.stop();
                    }
                }
                toStop.remove(bundle);
            }
        }

        // eagerly load some classes
        try {
            getClass().getClassLoader().loadClass(Parser.class.getName());
            getClass().getClassLoader().loadClass(Clause.class.getName());
            getClass().getClassLoader().loadClass(Attribute.class.getName());
            getClass().getClassLoader().loadClass(Directive.class.getName());
            getClass().getClassLoader().loadClass(RefreshListener.class.getName());
        } catch (Exception ignored) {
        }

        Set<Bundle> toRefresh = new HashSet<Bundle>();
        Set<Bundle> toStart = new HashSet<Bundle>();
        for (Map.Entry<Bundle, String> e : lessToUpdate.entrySet()) {
            Bundle bundle = e.getKey();
            if (!"org.ops4j.pax.url.mvn".equals(bundle.getSymbolicName())) {
                System.out.println("updating: " + bundle.getSymbolicName());
                try {
                    if (!toReinstall.contains(bundle)) {
                        update(bundle, new URL(e.getValue()));
                    } else {
                        // uninstall + install
                        int sl = bundle.adapt(BundleStartLevel.class).getStartLevel();
                        int bs = bundle.getState();
                        bundle.uninstall();
                        bundle = bundleContext.installBundle(e.getValue());
                        if (sl > -1) {
                            bundle.adapt(BundleStartLevel.class).setStartLevel(sl);
                        }
                        switch (bs) {
                            case Bundle.UNINSTALLED: // ?
                            case Bundle.INSTALLED:
                            case Bundle.STARTING:
                            case Bundle.STOPPING:
                            case Bundle.RESOLVED:
                                break;
                            case Bundle.ACTIVE:
                                bundle.start();
                                break;
                        }
                    }
                } catch (BundleException ex) {
                    System.err.println("Failed to update: " + bundle.getSymbolicName() + ", due to: " + e);
                }
                toStart.add(bundle);
                toRefresh.add(bundle);
            }
        }
        findBundlesWithOptionalPackagesToRefresh(toRefresh);
        findBundlesWithFragmentsToRefresh(toRefresh);
        if (!toRefresh.isEmpty()) {
            final CountDownLatch l = new CountDownLatch(1);
            FrameworkListener listener = new RefreshListener(l);
            FrameworkWiring wiring = bundleContext.getBundle(0).adapt(FrameworkWiring.class);
            wiring.refreshBundles(toRefresh, listener);
            try {
                l.await();
            } catch (InterruptedException e) {
                throw new PatchException("Bundle refresh interrupted", e);
            }
        }
        for (Bundle bundle : toStart) {
            String hostHeader = bundle.getHeaders().get(Constants.FRAGMENT_HOST);
            if (hostHeader == null) {
                try {
                    bundle.start();
                } catch (BundleException e) {
                    System.err.println("Failed to start: " + bundle.getSymbolicName() + ", due to: " + e);
                }
            }
        }
    }

    private List<Bundle> getBundlesToDestroy(List<Bundle> bundles) {
        List<Bundle> bundlesToDestroy = new ArrayList<Bundle>();
        for (Bundle bundle : bundles) {
            ServiceReference[] references = bundle.getRegisteredServices();
            int usage = 0;
            if (references != null) {
                for (ServiceReference reference : references) {
                    usage += getServiceUsage(reference, bundles);
                }
            }
            if (usage == 0) {
                bundlesToDestroy.add(bundle);
            }
        }
        if (!bundlesToDestroy.isEmpty()) {
            bundlesToDestroy.sort((b1, b2) ->
                    (int) (b2.getLastModified() - b1.getLastModified()));
        } else {
            ServiceReference ref = null;
            for (Bundle bundle : bundles) {
                ServiceReference[] references = bundle.getRegisteredServices();
                for (ServiceReference reference : references) {
                    if (getServiceUsage(reference, bundles) == 0) {
                        continue;
                    }
                    if (ref == null || reference.compareTo(ref) < 0) {
                        ref = reference;
                    }
                }
            }
            if (ref != null) {
                bundlesToDestroy.add(ref.getBundle());
            }
        }
        return bundlesToDestroy;
    }

    private static int getServiceUsage(ServiceReference ref, List<Bundle> bundles) {
        Bundle[] usingBundles = ref.getUsingBundles();
        int nb = 0;
        if (usingBundles != null) {
            for (Bundle bundle : usingBundles) {
                if (bundles.contains(bundle)) {
                    nb++;
                }
            }
        }
        return nb;
    }

    protected void findBundlesWithFragmentsToRefresh(Set<Bundle> toRefresh) {
        for (Bundle b : toRefresh) {
            if (b.getState() != Bundle.UNINSTALLED) {
                String hostHeader = b.getHeaders().get(Constants.FRAGMENT_HOST);
                if (hostHeader != null) {
                    Clause[] clauses = Parser.parseHeader(hostHeader);
                    if (clauses != null && clauses.length > 0) {
                        Clause path = clauses[0];
                        for (Bundle hostBundle : bundleContext.getBundles()) {
                            if (hostBundle.getSymbolicName().equals(path.getName())) {
                                String ver = path.getAttribute(Constants.BUNDLE_VERSION_ATTRIBUTE);
                                if (ver != null) {
                                    VersionRange v = VersionRange.parseVersionRange(ver);
                                    if (v.contains(hostBundle.getVersion())) {
                                        toRefresh.add(hostBundle);
                                    }
                                } else {
                                    toRefresh.add(hostBundle);
                                }
                            }
                        }
                    }
                }
            }
        }
    }

    protected void findBundlesWithOptionalPackagesToRefresh(Set<Bundle> toRefresh) {
        // First pass: include all bundles contained in these features
        Set<Bundle> bundles = new HashSet<Bundle>(Arrays.asList(bundleContext.getBundles()));
        bundles.removeAll(toRefresh);
        if (bundles.isEmpty()) {
            return;
        }
        // Second pass: for each bundle, check if there is any unresolved optional package that could be resolved
        Map<Bundle, List<Clause>> imports = new HashMap<Bundle, List<Clause>>();
        for (Iterator<Bundle> it = bundles.iterator(); it.hasNext();) {
            Bundle b = it.next();
            String importsStr = b.getHeaders().get(Constants.IMPORT_PACKAGE);
            List<Clause> importsList = getOptionalImports(importsStr);
            if (importsList.isEmpty()) {
                it.remove();
            } else {
                imports.put(b, importsList);
            }
        }
        if (bundles.isEmpty()) {
            return;
        }
        // Third pass: compute a list of packages that are exported by our bundles and see if
        //             some exported packages can be wired to the optional imports
        List<Clause> exports = new ArrayList<Clause>();
        for (Bundle b : toRefresh) {
            if (b.getState() != Bundle.UNINSTALLED) {
                String exportsStr = b.getHeaders().get(Constants.EXPORT_PACKAGE);
                if (exportsStr != null) {
                    Clause[] exportsList = Parser.parseHeader(exportsStr);
                    exports.addAll(Arrays.asList(exportsList));
                }
            }
        }
        for (Iterator<Bundle> it = bundles.iterator(); it.hasNext();) {
            Bundle b = it.next();
            List<Clause> importsList = imports.get(b);
            for (Iterator<Clause> itpi = importsList.iterator(); itpi.hasNext();) {
                Clause pi = itpi.next();
                boolean matching = false;
                for (Clause pe : exports) {
                    if (pi.getName().equals(pe.getName())) {
                        String evStr = pe.getAttribute(Constants.VERSION_ATTRIBUTE);
                        String ivStr = pi.getAttribute(Constants.VERSION_ATTRIBUTE);
                        Version exported = evStr != null ? Version.parseVersion(evStr) : Version.emptyVersion;
                        VersionRange imported = ivStr != null ? VersionRange.parseVersionRange(ivStr) : VersionRange.ANY_VERSION;
                        if (imported.contains(exported)) {
                            matching = true;
                            break;
                        }
                    }
                }
                if (!matching) {
                    itpi.remove();
                }
            }
            if (importsList.isEmpty()) {
                it.remove();
            }
        }
        toRefresh.addAll(bundles);
    }

    protected List<Clause> getOptionalImports(String importsStr) {
        Clause[] imports = Parser.parseHeader(importsStr);
        List<Clause> result = new LinkedList<Clause>();
        for (Clause anImport : imports) {
            String resolution = anImport.getDirective(Constants.RESOLUTION_DIRECTIVE);
            if (Constants.RESOLUTION_OPTIONAL.equals(resolution)) {
                result.add(anImport);
            }
        }
        return result;
    }

    /*
     * Create a bundle version history based on the information in the .patch and .patch.result files
     */
    protected BundleVersionHistory createBundleVersionHistory() {
        return new BundleVersionHistory(load(true));
    }

    /**
     * Check if the set of patches mixes P and R patches. We can install several {@link PatchKind#NON_ROLLUP}
     * patches at once, but only one {@link PatchKind#ROLLUP} patch.
     * @param patches
     * @return kind of patches in the set
     */
    private PatchKind checkConsistency(Collection<Patch> patches) throws PatchException {
        boolean hasP = false;
        boolean hasR = false;
        for (Patch patch : patches) {
            if (patch.getPatchData().isRollupPatch()) {
                if (hasR) {
                    throw new PatchException("Can't install more than one rollup patch at once");
                }
                hasR = true;
            } else {
                hasP = true;
            }
        }
        if (hasR && hasP) {
            throw new PatchException("Can't install both rollup and non-rollup patches in single run");
        }

        return hasR ? PatchKind.ROLLUP : PatchKind.NON_ROLLUP;
    }

    /**
     * Check if the requirements for all specified patches have been installed
     * @param patches the set of patches to check
     * @throws PatchException if at least one of the patches has missing requirements
     */
    protected void checkPrerequisites(Collection<Patch> patches) throws PatchException {
        for (Patch patch : patches) {
            checkPrerequisites(patch);
        }
    }

    /**
     * Check if the requirements for the specified patch have been installed
     * @param patch the patch to check
     * @throws PatchException if the requirements for the patch are missing or not yet installed
     */
    protected void checkPrerequisites(Patch patch) throws PatchException {
        for (String requirement : patch.getPatchData().getRequirements()) {
            Patch required = getPatch(requirement);
            if (required == null) {
                throw new PatchException(String.format("Required patch '%s' is missing", requirement));
            }
            if (!required.isInstalled()) {
                throw new PatchException(String.format("Required patch '%s' is not installed", requirement));
            }
        }
    }

    /**
     * Check if this is installation in @{link {@link org.jboss.fuse.patch.management.EnvType#STANDALONE_CHILD}}
     * - in this case the patch has to be installed in root first
     * @param patches
     */
    private void checkStandaloneChild(Collection<Patch> patches) {
        if (patchManagement.isStandaloneChild()) {
            for (Patch patch : patches) {
                if (patch.getResult() == null) {
                    throw new PatchException(String.format("Patch '%s' should be installed in parent container first", patch.getPatchData().getId()));
                } else {
                    List<String> bases = patch.getResult().getKarafBases();
                    boolean isInstalledInRoot = false;
                    for (String base : bases) {
                        String[] coords = base.split("\\s*\\|\\s*");
                        if (coords.length == 2 && coords[1].trim().equals(System.getProperty("karaf.home"))) {
                            isInstalledInRoot = true;
                        }
                    }
                    if (!isInstalledInRoot) {
                        throw new PatchException(String.format("Patch '%s' should be installed in parent container first", patch.getPatchData().getId()));
                    }
                }
            }
        }
    }

    /**
     * See old version of {@code org.apache.karaf.util.bundles.BundleUtils}
     * @param bundle
     * @throws IOException
     * @throws BundleException
     */
    public static void update(Bundle bundle) throws IOException, BundleException {
        update(bundle, null);
    }

    /**
     * See old version of {@code org.apache.karaf.util.bundles.BundleUtils}
     * @param bundle
     * @param location
     * @throws IOException
     * @throws BundleException
     */
    public static void update(Bundle bundle, URL location) throws IOException, BundleException {
        if (location == null) {
            String loc = bundle.getHeaders().get(Constants.BUNDLE_UPDATELOCATION);
            if (loc == null || loc.equals(bundle.getLocation())) {
                bundle.update();
                return;
            } else {
                location = new URL(loc);
            }
        }
        try (InputStream is = location.openStream()) {
            File file = BundleUtils.fixBundleWithUpdateLocation(is, location.toString());
            try (FileInputStream fis = new FileInputStream(file)) {
                bundle.update(fis);
            }
            file.delete();
        }
    }

    @Reference(service = PatchManagement.class, cardinality = ReferenceCardinality.MANDATORY, policy = ReferencePolicy.STATIC)
    public void setPatchManagement(PatchManagement patchManagement) {
        this.patchManagement = patchManagement;
    }

    @Reference(service = FeaturesService.class, cardinality = ReferenceCardinality.MANDATORY, policy = ReferencePolicy.STATIC)
    public void setFeaturesService(FeaturesService featuresService) {
        this.featuresService = featuresService;
    }

    @Reference(service = BackupService.class, cardinality = ReferenceCardinality.MANDATORY, policy = ReferencePolicy.STATIC)
    public void setBackupService(BackupService backupService) {
        this.backupService = backupService;
    }

    @Reference(service = URLStreamHandlerService.class, cardinality = ReferenceCardinality.MANDATORY, policy = ReferencePolicy.STATIC,
    target = "(url.handler.protocol=mvn)")
    public void setURLStreamHandlerService(URLStreamHandlerService urlStreamHandlerService) {
        this.mvnService = urlStreamHandlerService;
    }

    /**
     * Contains the history of bundle versions that have been applied through the patching mechanism
     */
    protected static final class BundleVersionHistory {

        // symbolic name -> version -> location
        private Map<String, Map<String, String>> bundleVersions = new HashMap<String, Map<String, String>>();

        public BundleVersionHistory(Map<String, Patch> patches) {
            for (Map.Entry<String, Patch> patch : patches.entrySet()) {
                PatchResult result = patch.getValue().getResult();
                if (result != null) {
                    for (BundleUpdate update : result.getBundleUpdates()) {
                        if (update.getNewVersion() != null && update.getSymbolicName() != null) {
                            String symbolicName = stripSymbolicName(update.getSymbolicName());
                            Map<String, String> versions = bundleVersions.computeIfAbsent(symbolicName, k -> new HashMap<String, String>());
                            versions.put(update.getNewVersion(), update.getNewLocation());
                        }
                    }
                }
            }
        }

        /**
         * Get the bundle location for a given bundle version.  If this bundle version was not installed through a patch,
         * this methods will return the original bundle location.
         *
         * @param bundle the bundle
         * @return the location for this bundle version
         */
        protected String getLocation(Bundle bundle) {
            String symbolicName = bundle.getSymbolicName() == null ? null : stripSymbolicName(bundle.getSymbolicName());
            Map<String, String> versions = bundleVersions.get(symbolicName);
            String location = null;
            if (versions != null) {
                location = versions.get(bundle.getVersion().toString());
            }
            if (location == null) {
                location = bundle.getLocation();
            }
            return location;
        }
    }

    private static class RefreshListener implements FrameworkListener {

        private final CountDownLatch l;

        public RefreshListener(CountDownLatch l) {
            this.l = l;
        }

        @Override
        public void frameworkEvent(FrameworkEvent event) {
            l.countDown();
        }
    }

    /**
     * Information about a patch dropped into {@code FUSE_HOME/patches} as a ZIP file. This method
     * allows only non-rollup patches to be installed, but nothing prevents user from doing something
     * strange here.
     */
    private static class DeployedPatch {
        // ZIP file with a patch (probably)
        private final File zipFile;
        // last time the ZIP file was checked
        private long timestamp;
        private PatchData patchData;

        public DeployedPatch(File zip) {
            this(zip, 0L);
        }

        public DeployedPatch(File zipFile, long timestamp) {
            this.zipFile = zipFile;
            this.timestamp = timestamp;
        }

        public File getZipFile() {
            return zipFile;
        }

        public long getTimestamp() {
            return timestamp;
        }

        public void setTimestamp(long timestamp) {
            this.timestamp = timestamp;
        }

        public PatchData getPatchData() {
            return patchData;
        }

        public void setPatchData(PatchData patchData) {
            this.patchData = patchData;
        }

        public boolean hasChanged() {
            return zipFile.lastModified() > this.timestamp;
        }
    }

}
